Compile aquameasure, hobo, tidbit, and vemco data from a single deployment

Usage

ss_compile_deployment_data(
  path,
  trim = TRUE,
  ignore_sensors = NULL,
  depth_override = NULL
)

Arguments

path: File path to the log, aquameasure, hobo, tidbit, and/or vemco folders.
trim: Logical value indicating whether to trim the data to the dates specified in deployment_dates. (Note: four hours are added to the retrieval date to account for AST, e.g., in case the sensor was retrieved after 20:00 AST, which is 00:00 UTC the next day.) Default is trim = TRUE.
ignore_sensors: Vector of sensor serial numbers for sensors that are in the deployment log, but should NOT be compiled (e.g., data file missing).
depth_override: An optional character string indicating which depth variable to compile. In some files (e.g., Borgles Island 2018-02-28), there is only one "Seawater depth" observation, but a full deployment of "Average seawater depth" observations. In this case, force the code to compile the average seawater depth with depth_override = Average seawater depth.

Value

Returns a data frame of data from a sensor string deployment.

Details

Reads the deployment log and then calls ss_compile_aquameasure_data(), ss_compile_hobo_data(), and ss_compile_vemco_data() and returns the results in a single data frame.

aquameasure data must be in a folder named aquameasure, hobo data must be in a folder named hobo, tidbit data must be in a folder named tidbit, and vemco data must be in a folder name vemco (folder names are not case sensitive). The aquameasure, hobo, tidbit, and vemco folders must be in the same folder.

Columns with deployment details are added (e.g., county, waterbody, latitude, longitude, station, lease, string_configuration).

Author

Danielle Dempsey